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Characterization of a divergent chromosome region in the willow warbler Phylloscopus trochilus using avian genomic resources.

Author:
  • Max Lundberg
  • Susanne Åkesson
  • Staffan Bensch
Publishing year: 2011
Language: English
Pages: 1241-1253
Publication/Series: Journal of evolutionary biology
Volume: 24
Document type: Journal article
Publisher: John Wiley & Sons

Abstract english

Genome scans have made it possible to find outlier markers thought to have been influenced by divergent selection in almost any wild population. However, the lack of genomic information in nonmodel species often makes it difficult to associate these markers with certain genes or chromosome regions. Furthermore, the extent of linkage disequilibrium (LD) in the genome will determine the density of markers required to identify the genes under selection. In this study, we investigated a chromosome region in the willow warbler Phylloscopus trochilus surrounding a single marker previously identified in a genome scan. We first located the marker in the assembled genome of another species, the zebra finch Taeniopygia guttata, and amplified surrounding sequences in Fennoscandian willow warblers. Within an investigated chromosome region of 7.3 Mb as mapped to the zebra finch genome, we observed elevated genetic differentiation between a southern and a northern population across a 2.5-Mb interval comprising numerous coding genes. Within the southern and northern populations, higher values of LD were mostly found between SNPs within the same locus, but extended across distantly situated loci when the analyses were restricted to sampling sites showing intermediate allele frequencies of southern and northern alleles. Our study shows that cross-species genome information is a useful resource to obtain candidate sequences adjacent to outlier markers in nonmodel species.

Keywords

  • Biological Sciences
  • adaptive divergence
  • barrier to gene flow
  • hybrid zone
  • linkage disequilibrium
  • Phylloscopus
  • zebra finch genome

Other

Published
  • CAnMove
  • Molecular Ecology and Evolution Lab
  • ISSN: 1420-9101
Staffan Bensch
E-mail: staffan [dot] bensch [at] biol [dot] lu [dot] se

Professor

MEMEG

+46 46 222 42 92

E-C213

Sölvegatan 37, Lund

50

Head of unit

MEMEG

+46 46 222 42 92

E-C213

Sölvegatan 37, Lund

50

Research group

Molecular Ecology and Evolution Lab

Projects

Doctoral students and postdocs

PhD students, main supervisor

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