Lund University is celebrating 350 years. Read more on lunduniversity.lu.se

Menu

Javascript is not activated in your browser. This website needs javascript activated to work properly.
You are here

Bioinformatics

Description

As a registered Illumina user at my.illumina.com you will also get access to the Illumina BaseSpace, which is a cloud-based storage of sequencing data. From there the user can download compressed fastq files and, if needed, raw data. The DNA Sequencing Facility keeps a local backup of all data. In Illumina BaseSpace users can perform various kind of standard analyses of their next generation sequencing data with the help of BaseSpace apps. Many of these apps are wrappers for commonly used bioinformatic software.

However, in the majority of cases, users download the fastq files and perform their own analyses. A bioinformatic analysis can take considerable time. The DNA Sequencing Facility always encourage customers to take into account the costs of bioinformatics in their projects before they actually starts.

The DNA Sequencing Facility is happy to give advice on how to process and analyze data, especially in the fields of genome sequencing, 16S and 18S rRNA gene amplicon sequencing, gene prediction, annotation, gene expression and variant calling. If further assistance is needed the facility charge a reduced fee per hour.

Prices

The rate for bioinformatic support is 300 SEK per hour and is a subsidized prize for faculty staff only. Minimum charge is for two hours. For all users “overhead” charges will be applied.

Page Manager:
Genetic information storage, conceptual computer artwork. Molecules of DNA (deoxyribonucleic acid) on the surface of a dvd. DNA contains sections, called genes, which encode an organism's genetic information.
Credit: Victor de Schwanberg / Science Photo Library / Universal Images Group

Contact information

The sequencing Facility is situated at Sölvegatan 37, in the Ecology Building on Floor 2 (stair case A)

For inquiries about Illumina MiSeq sequencing and analyses on Agilent BioAnalyzer contact:

Tomas Johansson
Researcher
MEMEG

Telephone: +46 46-222 45 49
Mobile: +46 709-57 18 04
E-mail: Tomas [dot] Johansson [at] biol [dot] lu [dot] se

For inquiries about ABI Sanger sequencing contact:

Eva Friman
Research Engineer
MEMEG

Telephone: +46 46-222 08 70
Mobile: +46 767-64 52 66
E-mail: Eva [dot] Friman [at] biol [dot] lu [dot] se

For inquiries about Bioinformatics contact:

Björn Canbäck
Research Engineer
MEMEG

Telephone: +46 46-222 94 19
E-mail: Bjorn [dot] Canback [at] biol [dot] lu [dot] se

Funding

The facility acknowledges generous financial support during the years from the Knut and Alice Wallenberg Foundation (SWEGENE programme), the Crafoord Foundation and the Faculty of Science, Lund University.