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Nikolay Oskolkov

Research engineer

I am a senior bioinformatician at the Department of Biology, Lund University, working as a local node of Long-Term Support (WABI) team within National Bioinformatics Infrastructure Sweden (NBIS) at the Science for Life Laboratory (SciLifeLab). I provide advanced bioinformatics support for national projects and am responsible for transfer of bioinformatics knowledge and networking both nationally and within Lund University. My expertise mostly includes Next-Generation Sequencing (NGS) data analysis as well as mathematical modeling, data mining and statistical analysis.

Publications

Retrieved from Lund University's publications database

Latest

All

Publications

Retrieved from Lund University's publications database

2018
- Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
  Michael Bartoschek, Nikolay Oskolkov, Matteo Bocci, John Lövrot, Christer Larsson, et al.
  (2018) Nature Communications
  Journal article
2017
- Glucose-induced Changes in Gene Expression in Human Pancreatic Islets - Causes or Consequences of Chronic Hyperglycemia
  Emilia Ottosson-Laakso, Ulrika Krus, Petter Storm, Rashmi B Prasad, Nikolay Oskolkov, et al.
  (2017) Diabetes
  Journal article
- LoFtool : a gene intolerance score based on loss-of-function variants in 60 706 individuals
  João Fadista, Nikolay Oskolkov, Ola Hansson, Leif Groop
  (2017) Bioinformatics
  Journal article
2016
- Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes
  James Dooley, Lei Tian, Susann Schonefeldt, Viviane Delghingaro-Augusto, Josselyn E Garcia-Perez, et al.
  (2016) Nature Genetics
  Journal article
- HMGB1 binds to the rs7903146 locus in TCF7L2 in human pancreatic islets.
  Yuedan Zhou, Nikolay Oskolkov, Liliya Shcherbina, Joyce Ratti, Kian-Hong Kock, et al.
  (2016) Molecular and Cellular Endocrinology
  Journal article
2015
- A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging.
  Jing Su, Carl Ekman, Nikolay Oskolkov, Leo Lahti, Kristoffer Ström, et al.
  (2015) Skeletal Muscle
  Journal article
- Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.
  Kyle J Gaulton, Teresa Ferreira, Yeji Lee, Anne Raimondo, Reedik Mägi, et al.
  (2015) Nature Genetics
  Journal article
- Myocardin Family Members Drive Formation of Caveolae.
  Katarzyna Krawczyk, Ingrid Yao Mattisson, Mari Ekman, Nikolay Oskolkov, Rebecka Grantinge, et al.
  (2015) PLoS ONE
  Journal article
2014
- Leveraging cross-species transcription factor binding site patterns: from diabetes risk Loci to disease mechanisms.
  Melina Claussnitzer, Simon N Dankel, Bernward Klocke, Harald Grallert, Viktoria Glunk, et al.
  (2014) Cell
  Journal article
- RNA sequencing: current and prospective uses in metabolic research.
  Petter Vikman, Joao Fadista, Nikolay Oskolkov
  (2014) Journal of Molecular Endocrinology
  Journal article review
- TCF7L2 is a master regulator of insulin production and processing.
  Yuedan Zhou, Soo-Young Park, Jing Su, Kathleen Bailey, Emilia Ottosson Laakso, et al.
  (2014) Human Molecular Genetics
  Journal article

Publications

Retrieved from Lund University's publications database

Journal article
- Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
  Michael Bartoschek, Nikolay Oskolkov, Matteo Bocci, John Lövrot, Christer Larsson, et al.
  (2018) Nature Communications
- Glucose-induced Changes in Gene Expression in Human Pancreatic Islets - Causes or Consequences of Chronic Hyperglycemia
  Emilia Ottosson-Laakso, Ulrika Krus, Petter Storm, Rashmi B Prasad, Nikolay Oskolkov, et al.
  (2017) Diabetes, 66 p.3013-3028
- LoFtool : a gene intolerance score based on loss-of-function variants in 60 706 individuals
  João Fadista, Nikolay Oskolkov, Ola Hansson, Leif Groop
  (2017) Bioinformatics, 33 p.471-474
- HMGB1 binds to the rs7903146 locus in TCF7L2 in human pancreatic islets.
  Yuedan Zhou, Nikolay Oskolkov, Liliya Shcherbina, Joyce Ratti, Kian-Hong Kock, et al.
  (2016) Molecular and Cellular Endocrinology, 430 p.138-145
- Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes
  James Dooley, Lei Tian, Susann Schonefeldt, Viviane Delghingaro-Augusto, Josselyn E Garcia-Perez, et al.
  (2016) Nature Genetics, 48 p.519-527
- Myocardin Family Members Drive Formation of Caveolae.
  Katarzyna Krawczyk, Ingrid Yao Mattisson, Mari Ekman, Nikolay Oskolkov, Rebecka Grantinge, et al.
  (2015) PLoS ONE, 10
- A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging.
  Jing Su, Carl Ekman, Nikolay Oskolkov, Leo Lahti, Kristoffer Ström, et al.
  (2015) Skeletal Muscle, 5
- Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.
  Kyle J Gaulton, Teresa Ferreira, Yeji Lee, Anne Raimondo, Reedik Mägi, et al.
  (2015) Nature Genetics, 47 p.1415-1415
- TCF7L2 is a master regulator of insulin production and processing.
  Yuedan Zhou, Soo-Young Park, Jing Su, Kathleen Bailey, Emilia Ottosson Laakso, et al.
  (2014) Human Molecular Genetics, 23 p.6419-6431
- Leveraging cross-species transcription factor binding site patterns: from diabetes risk Loci to disease mechanisms.
  Melina Claussnitzer, Simon N Dankel, Bernward Klocke, Harald Grallert, Viktoria Glunk, et al.
  (2014) Cell, 156 p.343-358
Journal article review
- RNA sequencing: current and prospective uses in metabolic research.
  Petter Vikman, Joao Fadista, Nikolay Oskolkov
  (2014) Journal of Molecular Endocrinology, 53 p.93-101

Page Manager: Mads [dot] Schou [at] biol [dot] lu [dot] se

17 July 2018

Nikolay Oskolkov

Nikolay Oskolkov

E-mail: nikolay [dot] oskolkov [at] biol [dot] lu [dot] se

Research engineer

Molecular Cell Biology

Mobile number:+46 76 146 33 49

Room number:B-B314

Visiting address:Sölvegatan 35, Lund

Service point:4

My profile in Lund University research portal

Research group

Microbial Ecology

VISITING ADDRESSES

Biology Building
Sölvegatan 35
223 62 Lund

Ecology Building
Sölvegatan 37
223 62 Lund

Arkivcentrum Syd
Porfyrvägen 20
224 78 Lund

DELIVERY ADDRESSES

Biology Building
general deliveries
Sölvegatan 35B
223 62 Lund

Biology Building
House D
Naturvetarvägen 2
223 62 Lund

Ecology Building
Naturvetarvägen 6A
223 62 Lund

Arkivcentrum Syd
Porfyrvägen 20
224 78 Lund

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