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DNA Sequencing Informatics II, 7.5 cr


This hands on course will give you additional experience in analyzing next generation sequencing data. It is particularly focused on the downstream analysis after assembly of:

  • transcriptome data
  • amplicon data
  • genome data

Working environment is Linux. You will work on two case studies from research conducted at the Department of Biology. 

Included is a crash course in web programming.

Covered areas includes:

  • gene prediction
  • alignments
  • phylogenetic trees
  • metabolic pathways
  • synteny
  • ontology
  • orthology
  • signal proteins
  • membrane proteins
  • secreted proteins
  • protein domains

The course ends with an one week project work. Please, note that you have to attend almost all of the scheduled exercises.

Application and Prerequisites

Page Manager:

Study coordinator

Lotta Persmark
Study advisor
Education office, Ecology building

Telephone: +46 46-222 37 28
E-mail: Lotta [dot] Persmark [at] biol [dot] lu [dot] se

Course Coordinator

Dag Ahrén
Principal investigator
Department of Biology

E-mail: Dag [dot] Ahren [at] biol [dot] lu [dot] se

Course literature

You find all literature at our course literature page

Course period

The course is offered the first part of the spring term. The medium of instruction is English.


Preliminary schedule (pdf; 14 kB)

Resit exam occasions

Resit exams