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DNA Sequencing Informatics I, 7.5 cr

BINP28

This hands on course will give you the experience and provide the tools that are needed to analyze next generation sequencing data. It is particularly focused on the analysis of:

  • transcriptome data
  • amplicon data
  • genome data

Working environment is Linux and the course will develop the students’ skills in Bash and Python.

Covered areas are:

  • assemblies
  • differential expression
  • variant calling
  • gene prediction
  • annotation
  • community structure analysis

The course ends with an one week project work. Please, note that you have to attend almost all of the scheduled exercises.

Application and Prerequisites

Page Manager:

Study coordinator

Lotta Persmark
Study advisor
Education office

Telehone: +46 46-222 37 28
E-mail: Lotta [dot] Persmark [at] biol [dot] lu [dot] se

Course coordinator

Björn Canbäck
Senior Lecturer
Molecular Cell Biology

Telephone: 046-222 94 19
E-mail: Bjorn [dot] Canback [at] biol [dot] lu [dot] se

Course literature

Handouts (free of charge)

Course period

The course is offered the first part of the spring term. The medium of instruction is English.

Schedule

Schedule (pdf)

Resit exam occasions

Resit exams