Lund University is celebrating 350 years. Read more on lunduniversity.lu.se

Menu

Javascript is not activated in your browser. This website needs javascript activated to work properly.
You are here

DNA Sequencing Informatics II, 7.5 cr

BINP29

This hands on course will give you additional experience in analyzing next generation sequencing data. It is particularly focused on the downstream analysis after assembly of:

  • transcriptome data
  • amplicon data
  • genome data

Working environment is Linux. You will work on two case studies from research conducted at the Department of Biology. 

Included is a crash course in web programming.

Covered areas includes:

  • gene prediction
  • alignments
  • phylogenetic trees
  • metabolic pathways
  • synteny
  • ontology
  • orthology
  • signal proteins
  • membrane proteins
  • secreted proteins
  • protein domains

The course ends with an one week project work. Please, note that you have to attend almost all of the scheduled exercises.

Page Manager:

Study coordinator

Lotta Persmark
Study advisor
Education office

Telehone: +46 46-222 37 28
E-mail: Lotta.Persmark [at] biol.lu.se

Course Coordinator

Björn Canbäck
Senior lecturer
MEMEG

Telephone: 046-222 94 19
Mobile: 073-022 62 50
E-mail: Bjorn.Canback [at] biol.lu.se

Course literature

Handouts.

Course period

The course is offered the first part of the spring term. The medium of instruction is English.

Schedule

Preliminary schedule (pdf; kB)

Resit exam occasions

Resit exams